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Software projects
Our lab has developed a number of software projects for fMRI data analysis, experimental design, and informatics, in collaboration with several other groups around the world.
The Cognitive Atlas - This project aims to develop an ontology for cognitive neuroscience.
OpenfMRI - This project is developing a database of openly shared fMRI data.
pubbrain.org - Developed in collaboration with the UCLA Center for Cognitive Phenomics, this site is an automatic meta-analytic search aid that allows for visualizing PubMed searches based on published neuroanatomic findings.LONI Probabilistic Atlas - Developed in collaboration with the UCLA Laboratory of Neuroimaging and Center for Cognitive Phenomics, this project provides free and open access to a probabilistic atlas of cortical structures in 40 healthy individuals, including all raw data.
fmripower.org - Software developed by Jeanette Mumford in the Poldrack lab for statistical power analysis for fMRI studies.
Automated ICA-based denoising- Toolbox developed by Jussi Tohka at the Tampere University of Technology in Finland in collaboration with our laboratory and the UCLA Laboratory of Neuroimaging.
Raw data diagnostics - An R program that reads in a 4-D data file and provides a diagnostic report.
Code to run various tasks used in the lab
fMRI Toolbox -Formerly known as the "SPM Toolbox", this site hosts tools for fMRI design optimization tools, data simulation, and ROI analysis for FSL
